top of page

Papers:

• Group members are in pink

• PDFs are only for open access publications

• # marks represent equal contributions

  1. Masuda T, Inomura K, Gao M, Armin G, Kotabová E, Bernát G, Lawrenz E, Lukeš M, Bečková M, Steinbach G, Komenda J, Prášil O (2023) The balance between photosynthesis and respiration explains the niche differentiation between Crocosphaera and Cyanothece. Computational and Structural Biotechnology Journal 21:58–65.
     PDF   Link 
     

  2. Inomura K, Deutsch C, Jahn O, Dutkiewicz S, Follows MJ (2022) Global patterns in marine organic matter stoichiometry driven by phytoplankton ecophysiology. Nature Geoscience 15:1034-1040.
     PDF   Link 
     

  3. Agarwal V, Inomura K, Mouw CB (2022) Quantitative analysis of the trade-offs of colony formation for Trichodesmium. Microbiology Spectrum 10.1128/spectrum.02025-22.
     PDF   Link 
     

  4. #Kim J, #Armin G, #Inomura K (2022) Saturating relationship between phytoplankton growth rate and nutrient concentration explained by macromolecular allocation. Current Research in Microbial Sciences 3:100167.
     PDF   Link 
     

  5. Armin G, Inomura K (2022) Modeling the elemental stoichiometry and silicon accumulation in diatoms. Current Research in Microbial Sciences 3:100164.
     PDF   Link 
     

  6. Gao M, Armin G, Inomura K (2022) Low-ammonium environment increases the nutrient exchange between diatom-diazotroph association cells and facilitates photosynthesis and N2 fixation–A mechanistic modeling analysis. Cells 11:2911.
     PDF   Link 
     

  7. Benavides M, Bonnet S, Le Moigne FAC, Armin G, Inomura K, Hallstrøm S, Riemann L, Berman-Frank I, Poletti E, Garel M, Grosso O, Leblanc K, Guigue C, Tedetti M, Dupouy C (2022) Sinking Trichodesmium fixes nitrogen in the dark ocean. ISME Journal
    DOI: 10.1038/s41396-022-01289-6.
     Link   Link2 
     

  8. Luo W, Inomura K, Zhang H, Luo Y-W (2022) N2 fixation in Trichodesmium does not require spatial segregation from photosynthesis. mSystems 7:e00538-22.
     PDF   Link 
     

  9. Deutsch C, Penn JL, Verberk WCEP, Inomura K, Endress M-G, Payne JL (2022) Impact of warming on aquatic body sizes explained by metabolic scaling from microbes to macrofauna. Proceedings of National Academy of Sciences 119:e2201345119.
     PDF   Link 
     

  10. #Masuda T, #Inomura K, Kodama T, Shiozaki T, Kitajima S, Armin G, Matsui T, Suzuki K, Takeda S, Prášil O, Furuya K (2022) Crocosphaera as a major consumer of fixed nitrogen. Microbiology Spectrum 10:e02177-21.
     PDF   Link 
     

  11. Masuda T, Inomura K, Mareš J, Prášil O (2022) Crocosphaera watsonii. Trends in Microbiology 30:805–806.
     PDF      Link   
     

  12. Shiozaki T, Inomura K, Fujiwara A, Hirose Y, Hashihama F, Harada N (2022) Reply to: Questioning high nitrogen fixation rate measurements in the Southern Ocean. Nature Geoscience 15:31–33.
     Link 
     

  13. Inomura K, Masuda T, Eichner M, Rabouille S, Zavřel T, Červený J, Vancová M, Bernát G, Armin G, Claquin P, Kotabová E, Stephan S, Suggett DJ, Deutsch C, Prášil O (2021) Quantifying Cyanothece growth under DIC limitation. Computational and Structural Biotechnology Journal 19:6456–6464.
     PDF       Link 
     

  14. Armin G, Inomura K (2021) Modeled temperature dependencies of macromolecular allocation and elemental stoichiometry in phytoplankton. Computational and Structural Biotechnology Journal 19:5421–5427.
     PDF   Link 
     

  15. Chakraborty S, Andersen KH, Visser AW, Inomura K, Follows MJ, Riemann L (2021) Quantifying nitrogen fixation by heterotrophic bacteria in sinking marine particles. Nature Communications 12:4085.
     PDF   Link 
     

  16. Masuda T, Prášil O, Villafañe VE, Valiñas MS, Inomura K, Helbling EW (2021) Impact of increased nutrients and lowered pH on photosynthesis and growth of three marine phytoplankton communities from the coastal South West Atlantic (Patagonia, Argentina). Frontiers in Marine Science 8:609962. 
     PDF       Link 
     

  17. Inomura K, Deutsch C, Masuda T, Prášil O, Follows MJ (2020) Quantitative models of nitrogen-fixing organisms. Computational and Structural Biotechnology Journal 18:3905–3924. 
     PDF       Link 
     

  18. Shiozaki T, Fujiwara A, Inomura K, Hirose Y, Hashihama F, Harada N (2020) Biological nitrogen fixation detected under Antarctic sea ice. Nature Geosciences 13: 729-732.
     Link   
     

  19. Masuda T, Inomura K, Takahata N, Shiozaki T, Sano Y, Deutsch C, Prášil O, Furuya K (2020) Heterogeneous nitrogen fixation rates confer energetic advantage and expanded ecological niche of unicellular diazotroph populations. Communications Biology 3:172. 
     PDF       Link  
     

  20. Omta AW, Talmy D, Inomura K, Irwin AJ, Finkel Z V, Sher D, Liefer JD, Follows MJ (2020) Quantifying nutrient throughput and DOM production by algae in continuous culture. Journal of Theoretical Biology 494:110214. 
     PDF       Link 
     

  21. Inomura K, Omta AW, Talmy D, Bragg J, Deutsch C, Follows MJ (2020) A Mechanistic model of macromolecular allocation, elemental stoichiometry, and growth rate in phytoplankton. Frontiers in Microbiology 11:1–22. 
     PDF       Link 
     

  22. Inomura K, Follett CL, Masuda T, Eichner M, Prášil O, Deutsch C (2020) Carbon transfer from the host diatom enables fast growth and high rate of N2 fixation by symbiotic heterocystous cyanobacteria. Plants 9:192. 
     PDF       Link 
     

  23. Inomura K, Deutsch C, Wilson ST, Masuda T, Lawrenz E, Sobotka R, Bučinská L, Gauglitz JM, Saito MA, Prášil O, Follows MJ (2019) Quantifying oxygen management and temperature and light dependencies of nitrogen fixation by Crocosphaera watsonii. mSphere 4:e00531-19. 
     PDF       Link 
     

  24. Inomura K, Masuda T, Gauglitz JM (2019) Active nitrogen fixation by Crocosphaera expands their niche despite the presence of ammonium – A case study. Scientific Reports 9:15064. 
     PDF       Link 
     

  25. Inomura K, Wilson ST, Deutsch C (2019) Mechanistic model for the coexistence of nitrogen fixation and photosynthesis in marine Trichodesmium. mSystems 4:e00210-19. 
     PDF       Link 
     

  26. Inomura K, Bragg J, Riemann L, Follows MJ (2018) A quantitative model of nitrogen fixaion in the presence of ammonium. PLoS ONE 13:e0208282.  
     PDF       Link   Video 1   Video 2 
     

  27. Follett CL, Dutkiewicz S, Karl DM, Inomura K, Follows MJ (2018) Seasonal resource conditions favor a summertime increase in North Pacific diatom–diazotroph associations. ISME Journal 12:1543–1557. 
     PDF       Link 
     

  28. Inomura K, Bragg J, Follows MJ (2017) A quantitative analysis of the direct and indirect costs of nitrogen fixation: a model based on Azotobacter vinelandii. ISME Journal 11:166–175. 
     PDF       Link   Video 1   Video 2 
     

  29. Inomura K (2016) Development of a cell flux model and its application to nitrogen fixers. Dissertation.
     Link 
     

  30. Inomura K, Yuge K, Anan M, Shinogi Y (2010) Numerical analysis of anaerobically digested slurry with irrigation water in rice paddy. Journal of the Faculty of Agriculture, Kyushu University 55:357–363.
     Link 


     

bottom of page